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SRX24587945: WGS of methicillin-resistant Staphylococcus aureus
1 ILLUMINA (Illumina MiSeq) run: 284,702 spots, 171.4M bases, 91.1Mb downloads

Design: WGS from fragmented library
Submitted by: Nagasaki University Graduate School of Biomedical Sciences
Study: Comparison of the Effectiveness of Core Genome Multilocus Sequence Typing and Polymerase Chain Reaction-Based Open Reading Frame Typing in Tracing Nosocomial Methicillin-Resistant Staphylococcus aureus Transmission
show Abstracthide Abstract
We performed polymerase chain reaction-based open reading frame typing (POT) and core genome multilocus sequence typing (cgMLST) to investigate the occurrence of nosocomial transmission of MRSA and to compare the results of these methods.POT and whole genome sequencing were performed in 83 MRSA isolates.The cgMLST proved more effective for identifying nosocomial transmissions compared to POT, highlighting its utility in tracking MRSA spread in healthcare settings.
Sample:
SAMN41431925 • SRS21326937 • All experiments • All runs
Library:
Name: G10
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 284,702 spots, 171.4M bases, 91.1Mb
Run# of Spots# of BasesSizePublished
SRR29063327284,702171.4M91.1Mb2024-05-17

ID:
32906202

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